PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_3B340D60A.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 257aa    MW: 28480.9 Da    PI: 4.7933
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_3B340D60A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC172.93.5e-54821851101
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            ql++fw+++   i++atdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+tr
  Traes_7DL_3B340D60A.1  82 QLQQFWAERlseIDQATDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITR 169
                            89*****987779*************************************************************************** PP

                  NF-YC  86 tdifdflvdivprdel 101
                            td++dflvdi+prde+
  Traes_7DL_3B340D60A.1 170 TDVYDFLVDIIPRDEM 185
                            **************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.69E-3346176IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.9E-3796168IPR009072Histone-fold
PfamPF008086.1E-21104167IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEPSSQPQPA TGDVVAGGSQ VYPASAYPPA ATIAVAPGII PAASQPASPF PANPAQLTAQ  60
NQLIYEQAQQ FHQQLQQQQQ RQLQQFWAER LSEIDQATDF KNHTLPLARI KKIMKADEDV  120
RMISAEAPVV FAKACEIFIL ELTLRSWMHT EENKRRTLQK NDIAAAITRT DVYDFLVDII  180
PRDEMREEGV GLPRAGQPPL LGAPADASYP YYYPQQVPGA VMGYGGQQGH LPYVWQDPQE  240
QQQHQGHPGE QQQSESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_B3e-4191182194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4awl_C3e-4191182194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
1n1j_B3e-4191182497NF-YC
4g92_C4e-41721828119HapE
4g91_C4e-41721828119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8622160.0KJ862216.1 Triticum aestivum eukaryotic transcription factor NF-Y subunit C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644345.11e-122PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG71e-72NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLM8C3660.0M8C366_AEGTA; Nuclear transcription factor Y subunit C-2
STRINGORGLA06G0202500.11e-123(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-68nuclear factor Y, subunit C2